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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AF_1791Signal sequence peptidase (sec11); Similar to GB:Z47047 SP:P15367 PID:4433 PID:557828 PID:763367 percent identity: 36.30; identified by sequence similarity; putative. (189 aa)    
Predicted Functional Partners:
AF_1655
Signal sequence peptidase, putative; Similar to SP:P54506 PID:1303884 GB:AL009126 percent identity: 34.46; identified by sequence similarity; putative.
     
  0.900
AF_1657
Signal sequence peptidase (spc21); Similar to PID:1149703 percent identity: 46.97; identified by sequence similarity; putative.
     
  0.900
AF_2078
Predicted coding region AF_2078; Hypothetical protein; identified by GeneMark; putative.
     
  0.900
tatA
Conserved hypothetical protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
  
  
 0.888
AF_2235
Conserved hypothetical protein; Similar to PID:1652823 percent identity: 26.74; identified by sequence similarity; putative.
     
 0.845
atpF
H+-transporting ATP synthase, subunit F (atpF); Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
  
  0.764
atpC
H+-transporting ATP synthase, subunit C (atpC); Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
  
 0.732
atpE
H+-transporting ATP synthase, subunit E (atpE); Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
  
 0.720
AF_1787
Conserved hypothetical protein; Similar to GB:L77117 PID:1591790 percent identity: 34.42; identified by sequence similarity; putative.
 
     0.718
polB
Conserved hypothetical protein; Possesses two activities: a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3' to 5' direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase (By similarity); Belongs to the DNA polymerase delta/II small subunit family.
       0.712
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.