STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AF_1867Predicted coding region AF_1867; Hypothetical protein; identified by GeneMark; putative. (1004 aa)    
Predicted Functional Partners:
AF_1861
Predicted coding region AF_1861; Hypothetical protein; identified by GeneMark; putative.
 
 
 
 0.994
AF_1863
Predicted coding region AF_1863; Hypothetical protein; identified by GeneMark; putative.
 
 
 
 0.994
AF_1866
Predicted coding region AF_1866; Hypothetical protein; identified by GeneMark; putative.
 
 
 
 0.993
cmr5
Predicted coding region AF_1862; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Part of the Cmr ribonucleoprotein complex (By similarity).
 
 
 
 0.992
AF_1868
Predicted coding region AF_1868; Hypothetical protein; identified by GeneMark; putative.
 
 
 
 0.989
AF_1865
Conserved hypothetical protein; Similar to SP:P18017 PID:150742 percent identity: 28.74; identified by sequence similarity; putative.
       0.839
AF_1864
Predicted coding region AF_1864; Hypothetical protein; identified by GeneMark; putative; To A.aeolicus AQ_377.
       0.835
AF_1859
Predicted coding region AF_1859; Hypothetical protein; identified by GeneMark; putative.
 
  
 0.792
AF_1869
Predicted coding region AF_1869; Hypothetical protein; identified by GeneMark; putative.
     
 0.698
AF_0071
ATP-dependent RNA helicase, putative; Similar to GB:L77117 SP:Q57828 PID:1591089 percent identity: 29.59; identified by sequence similarity; putative.
 
  
 0.692
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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