STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AF_1869Predicted coding region AF_1869; Hypothetical protein; identified by GeneMark; putative. (213 aa)    
Predicted Functional Partners:
AF_0071
ATP-dependent RNA helicase, putative; Similar to GB:L77117 SP:Q57828 PID:1591089 percent identity: 29.59; identified by sequence similarity; putative.
       0.950
AF_1875
Predicted coding region AF_1875; Hypothetical protein; identified by GeneMark; putative.
     
 0.828
AF_1874
Predicted coding region AF_1874; Hypothetical protein; identified by GeneMark; putative.
       0.821
AF_1872
Predicted coding region AF_1872; Hypothetical protein; identified by GeneMark; putative.
     
 0.779
AF_1865
Conserved hypothetical protein; Similar to SP:P18017 PID:150742 percent identity: 28.74; identified by sequence similarity; putative.
       0.640
AF_1867
Predicted coding region AF_1867; Hypothetical protein; identified by GeneMark; putative.
     
 0.639
AF_1871
Conserved hypothetical protein; Similar to GB:L77117 SP:Q57826 PID:1591087 percent identity: 27.33; identified by sequence similarity; putative.
     
 0.633
AF_1863
Predicted coding region AF_1863; Hypothetical protein; identified by GeneMark; putative.
     
 0.620
AF_1861
Predicted coding region AF_1861; Hypothetical protein; identified by GeneMark; putative.
       0.615
cmr5
Predicted coding region AF_1862; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Part of the Cmr ribonucleoprotein complex (By similarity).
       0.615
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.