Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AF_1870Predicted coding region AF_1870; Hypothetical protein; identified by GeneMark; putative. (116 aa)    
Predicted Functional Partners:
AF_1872
Predicted coding region AF_1872; Hypothetical protein; identified by GeneMark; putative.
       0.832
AF_1873
Predicted coding region AF_1873; Hypothetical protein; identified by GeneMark; putative.
       0.832
AF_1875
Predicted coding region AF_1875; Hypothetical protein; identified by GeneMark; putative.
       0.804
AF_1871
Conserved hypothetical protein; Similar to GB:L77117 SP:Q57826 PID:1591087 percent identity: 27.33; identified by sequence similarity; putative.
       0.801
AF_1874
Predicted coding region AF_1874; Hypothetical protein; identified by GeneMark; putative.
       0.788
cas21
Conserved hypothetical protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Involved in the integration of spacer DNA into the CRISPR cassette (By similarity). Functions as a ssRNA-specific endoribonuclease.
       0.675
AF_1869
Predicted coding region AF_1869; Hypothetical protein; identified by GeneMark; putative.
       0.600
AF_1861
Predicted coding region AF_1861; Hypothetical protein; identified by GeneMark; putative.
       0.449
cmr5
Predicted coding region AF_1862; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Part of the Cmr ribonucleoprotein complex (By similarity).
       0.449
AF_1863
Predicted coding region AF_1863; Hypothetical protein; identified by GeneMark; putative.
       0.449
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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