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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AF_1871Conserved hypothetical protein; Similar to GB:L77117 SP:Q57826 PID:1591087 percent identity: 27.33; identified by sequence similarity; putative. (319 aa)    
Predicted Functional Partners:
AF_1872
Predicted coding region AF_1872; Hypothetical protein; identified by GeneMark; putative.
  
 
 0.946
AF_1875
Predicted coding region AF_1875; Hypothetical protein; identified by GeneMark; putative.
   
 
 0.940
AF_1874
Predicted coding region AF_1874; Hypothetical protein; identified by GeneMark; putative.
  
 
 0.934
AF_0071
ATP-dependent RNA helicase, putative; Similar to GB:L77117 SP:Q57828 PID:1591089 percent identity: 29.59; identified by sequence similarity; putative.
  
 
 0.879
cas5
Predicted coding region AF_0067; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA) (By similarity).
  
 
 0.816
AF_1870
Predicted coding region AF_1870; Hypothetical protein; identified by GeneMark; putative.
       0.798
AF_1873
Predicted coding region AF_1873; Hypothetical protein; identified by GeneMark; putative.
       0.797
cas21
Conserved hypothetical protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Involved in the integration of spacer DNA into the CRISPR cassette (By similarity). Functions as a ssRNA-specific endoribonuclease.
     
 0.747
AF_1869
Predicted coding region AF_1869; Hypothetical protein; identified by GeneMark; putative.
     
 0.664
AF_1867
Predicted coding region AF_1867; Hypothetical protein; identified by GeneMark; putative.
  
  
 0.591
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.