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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AF_1980Heme exporter protein C (helC); Similar to SP:P29961 GB:X63462 PID:46026 percent identity: 29.02; identified by sequence similarity; putative. (218 aa)    
Predicted Functional Partners:
AF_0983
Predicted coding region AF_0983; Hypothetical protein; identified by GeneMark; putative.
 
 0.999
AF_2192
Cytochrome C-type biogenesis protein (nrfE); Similar to GP:1790511 percent identity: 36.13; identified by sequence similarity; putative.
 
  
 0.931
AF_1057
Cytochrome C-type biogenesis protein (ccdA); Similar to SP:P45706 PID:870925 PID:1405449 GB:AL009126 percent identity: 30.69; identified by sequence similarity; putative.
  
  
 0.855
AF_0984
ABC transporter, ATP-binding protein; Similar to SP:P46903 PID:973330 PID:2415726 GB:AL009126 percent identity: 35.16; identified by sequence similarity; putative.
    
 0.815
AF_0116
Uroporphyrinogen III synthase (hemD); Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
  
  
 0.744
hemA
glutamyl-tRNA reductase (hemA); Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
 
  
 0.742
AF_1981
ABC transporter, permease protein; Similar to GB:L11577 SP:P42361 percent identity: 29.88; identified by sequence similarity; putative.
  
  
 0.710
AF_1984
Iron-dependent repressor (troR); Similar to GP:1777937 percent identity: 28.35; identified by sequence similarity; putative.
     
 0.690
AF_1982
ABC transporter, ATP-binding protein; Similar to GP:1777934 percent identity: 41.30; identified by sequence similarity; putative.
  
    0.689
hemL
Glutamate-1-semialdehyde aminotransferase (hemL); Similar to GB:L77117 SP:Q58020 PID:1591312 percent identity: 54.31; identified by sequence similarity; putative; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. HemL subfamily.
  
  
 0.682
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.