Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AF_2009Heme biosynthesis protein (nirJ-2); Similar to GP:1783281 percent identity: 31.76; identified by sequence similarity; putative. (468 aa)    
Predicted Functional Partners:
AF_2010
Predicted coding region AF_2010; Hypothetical protein; identified by GeneMark; putative.
       0.623
AF_1594
Heme biosynthesis protein (nirH); Similar to GP:1783280 percent identity: 25.20; identified by sequence similarity; putative.
 
  
 0.608
AF_2008
Conserved hypothetical protein; Similar to GB:L77117 PID:1499930 percent identity: 34.72; identified by sequence similarity; putative.
       0.544
AF_1687
Conserved hypothetical protein; Similar to GB:L77117 SP:Q57995 PID:1591282 percent identity: 32.45; identified by sequence similarity; putative.
       0.472
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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