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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AF_2154Conserved hypothetical protein; Similar to GB:L77117 PID:1500525 percent identity: 40.14; identified by sequence similarity; putative; Belongs to the UPF0179 family. (163 aa)    
Predicted Functional Partners:
cca
tRNA nucleotidyltransferase (cca); Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate.
 
     0.801
AF_2157
Conserved hypothetical protein; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
       0.763
AF_2155
Conserved hypothetical protein; Similar to SP:P54548 PID:1303962 GB:AL009126 percent identity: 33.33; identified by sequence similarity; putative.
       0.748
AF_2158
Predicted coding region AF_2158; Hypothetical protein; identified by GeneMark; putative.
       0.746
AF_2159
Predicted coding region AF_2159; Hypothetical protein; identified by GeneMark; putative.
       0.746
AF_2160
Predicted coding region AF_2160; Hypothetical protein; identified by GeneMark; putative.
       0.746
AF_1530
Conserved hypothetical protein; Similar to GB:L77117 SP:Q60351 PID:1590840 percent identity: 45.28; identified by sequence similarity; putative.
 
     0.692
AF_0587
Conserved hypothetical protein; Similar to GB:L77117 PID:1499864 percent identity: 31.13; identified by sequence similarity; putative.
  
     0.676
AF_2161
Predicted coding region AF_2161; Hypothetical protein; identified by GeneMark; putative.
       0.670
AF_0779
Predicted coding region AF_0779; Hypothetical protein; identified by GeneMark; putative.
  
     0.658
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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