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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AF_2164Predicted coding region AF_2164; Hypothetical protein; identified by GeneMark; putative. (132 aa)    
Predicted Functional Partners:
AF_2165
Predicted coding region AF_2165; Hypothetical protein; identified by GeneMark; putative.
       0.773
AF_2166
Conserved hypothetical protein; Similar to GP:1483281 percent identity: 22.31; identified by sequence similarity; putative.
       0.773
AF_2167
Predicted coding region AF_2167; Hypothetical protein; identified by GeneMark; putative.
       0.773
AF_2162
Predicted coding region AF_2162; Hypothetical protein; identified by GeneMark; putative.
       0.473
AF_2163
Predicted coding region AF_2163; Hypothetical protein; identified by GeneMark; putative.
       0.473
AF_2168
Conserved hypothetical protein; Similar to GB:L77117 PID:1592178 percent identity: 48.42; identified by sequence similarity; putative.
       0.428
AF_2169
Conserved hypothetical protein; Similar to GB:L77117 PID:1592179 percent identity: 35.16; identified by sequence similarity; putative.
       0.428
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.