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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AF_2338Predicted coding region AF_2338; Hypothetical protein; identified by GeneMark; putative. (336 aa)    
Predicted Functional Partners:
AF_2340
Predicted coding region AF_2340; Hypothetical protein; identified by GeneMark; putative.
      0.849
AF_2339
Predicted coding region AF_2339; Hypothetical protein; identified by GeneMark; putative.
       0.773
AF_2350
ATP-dependent RNA helicase HepA, putative; Similar to SP:P54509 PID:1303889 GB:AL009126 percent identity: 31.49; identified by sequence similarity; putative.
 
     0.730
AF_2345
Predicted coding region AF_2345; Hypothetical protein; identified by GeneMark; putative.
 
     0.722
AF_2347
Predicted coding region AF_2347; Hypothetical protein; identified by GeneMark; putative.
 
     0.722
AF_2341
Predicted coding region AF_2341; Hypothetical protein; identified by GeneMark; putative.
       0.574
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.