Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AF_2347Predicted coding region AF_2347; Hypothetical protein; identified by GeneMark; putative. (453 aa)    
Predicted Functional Partners:
AF_2345
Predicted coding region AF_2345; Hypothetical protein; identified by GeneMark; putative.
     0.984
AF_2346
Predicted coding region AF_2346; Hypothetical protein; identified by GeneMark; putative.
      0.965
AF_2348
Predicted coding region AF_2348; Hypothetical protein; identified by GeneMark; putative.
      0.964
AF_2350
ATP-dependent RNA helicase HepA, putative; Similar to SP:P54509 PID:1303889 GB:AL009126 percent identity: 31.49; identified by sequence similarity; putative.
 
   
 0.886
AF_2338
Predicted coding region AF_2338; Hypothetical protein; identified by GeneMark; putative.
 
     0.723
AF_2340
Predicted coding region AF_2340; Hypothetical protein; identified by GeneMark; putative.
       0.598
AF_2344
Predicted coding region AF_2344; Hypothetical protein; identified by GeneMark; putative.
       0.425
AF_0598
Conserved hypothetical protein; Similar to PID:1001780 PID:1006611 percent identity: 38.31; identified by sequence similarity; putative.
 
     0.417
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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