STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AF_2395Iron-dependent repressor; Similar to GB:L77117 SP:Q57988 PID:1592296 percent identity: 40.34; identified by sequence similarity; putative. (148 aa)    
Predicted Functional Partners:
AF_2396
Conserved hypothetical protein; Similar to GB:L77117 SP:Q57987 PID:1591273 percent identity: 43.24; identified by sequence similarity; putative.
  
  
 0.837
AF_2394
Iron (II) transporter (feoB-2); Similar to GB:L77117 SP:Q57986 PID:1591272 percent identity: 47.98; identified by sequence similarity; putative.
  
  
 0.780
AF_2393
Predicted coding region AF_2393; Hypothetical protein; identified by GeneMark; putative.
       0.762
AF_2232
Ferric uptake regulation protein (fur); Similar to GB:U06072 PID:508861 percent identity: 25.77; identified by sequence similarity; putative; Belongs to the Fur family.
  
  
 0.565
AF_1983
ABC transporter, periplasmic binding protein; Similar to GP:1777933 percent identity: 25.39; identified by sequence similarity; putative.
 
  
 0.545
AF_1981
ABC transporter, permease protein; Similar to GB:L11577 SP:P42361 percent identity: 29.88; identified by sequence similarity; putative.
 
  
 0.541
AF_1982
ABC transporter, ATP-binding protein; Similar to GP:1777934 percent identity: 41.30; identified by sequence similarity; putative.
 
  
 0.517
cdhA2
acetyl-CoA decarbonylase/synthase, subunit alpha (cdhA-2); Part of the ACDS complex that catalyzes the reversible cleavage of acetyl-CoA, allowing autotrophic growth from CO(2). The alpha-epsilon subcomponent functions as a carbon monoxide dehydrogenase.
       0.491
cdhB2
acetyl-CoA decarbonylase/synthase, subunit epsilon (cdhB-2); Part of a complex that catalyzes the reversible cleavage of acetyl-CoA, allowing autotrophic growth from CO(2). The alpha-epsilon subcomponent functions as a carbon monoxide dehydrogenase. The precise role of the epsilon subunit is unclear; it may have a stabilizing role within the alpha(2)epsilon(2) component and/or be involved in electron transfer to FAD during a potential FAD-mediated CO oxidation. Belongs to the CdhB family.
       0.481
AF_2127
Transcriptional regulatory protein, LysR family; Similar to GB:L77117 SP:Q57748 PID:1591023 percent identity: 30.80; identified by sequence similarity; putative.
  
 
 0.412
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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