Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AF_2401Predicted coding region AF_2401; Hypothetical protein; identified by GeneMark; putative. (348 aa)    
Predicted Functional Partners:
AF_2400
Predicted coding region AF_2400; Hypothetical protein; identified by GeneMark; putative.
       0.872
AF_2402
Conserved hypothetical protein; Similar to GB:L77117 SP:Q58536 PID:1591770 percent identity: 51.68; identified by sequence similarity; putative.
       0.737
AF_2399
rRNA methylase, putative; Similar to GB:L43967 PID:1045943 SP:P47494 percent identity: 36.36; identified by sequence similarity; putative; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.702
AF_2007
Riboflavin-specific deaminase (ribG); Catalyzes an early step in riboflavin biosynthesis, the NADPH-dependent reduction of the ribose side chain of 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate, yielding 2,5-diamino-6- ribitylamino-4(3H)-pyrimidinone 5'-phosphate.
       0.618
AF_2251
Competence-damage protein, putative; Similar to percent identity: 28.02; identified by sequence similarity; putative; Belongs to the CinA family.
       0.618
AF_2424
Conserved hypothetical protein; Similar to PID:1652337 percent identity: 27.67; identified by sequence similarity; putative.
       0.618
AF_2425
Methanol dehydrogenase regulatory protein (moxR); Similar to PID:1001216 PID:1001272 percent identity: 48.33; identified by sequence similarity; putative.
       0.618
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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