Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AF_2407Conserved hypothetical protein; Similar to GB:L77117 SP:Q58298 PID:1591566 percent identity: 35.33; identified by sequence similarity; putative. (203 aa)    
Predicted Functional Partners:
AF_2406
ATP-dependent RNA helicase, putative; Similar to GB:L77117 PID:1592195 percent identity: 35.19; identified by sequence similarity; putative.
  
    0.687
AF_2408
Conserved hypothetical protein; Similar to GP:1881347 percent identity: 28.89; identified by sequence similarity; putative.
       0.434
AF_0557
Flavoprotein reductase; Similar to GP:1480407 percent identity: 26.19; identified by sequence similarity; putative.
   
 0.427
AF_0254
NADH oxidase (noxA-1); Similar to GB:L77117 SP:Q58065 PID:1591361 percent identity: 35.14; identified by sequence similarity; putative.
   
 0.414
AF_0273
Sarcosine oxidase, subunit alpha (soxA); Similar to PID:927591 SP:Q46337 percent identity: 31.11; identified by sequence similarity; putative.
   
 0.414
AF_0395
NADH oxidase (noxA-2); Similar to GB:L77117 SP:Q58065 PID:1591361 percent identity: 35.45; identified by sequence similarity; putative.
   
 0.414
AF_0400
NADH oxidase (noxA-3); Similar to GB:L77117 SP:Q58065 PID:1591361 percent identity: 40.85; identified by sequence similarity; putative.
   
 0.414
AF_0951
NADH oxidase (noxA-4); Similar to GB:L77117 SP:Q58065 PID:1591361 percent identity: 36.71; identified by sequence similarity; putative.
   
 0.414
AF_1858
NADH oxidase (noxA-5); Similar to GB:L77117 SP:Q58065 PID:1591361 percent identity: 34.00; identified by sequence similarity; putative.
   
 0.414
rps13
SSU ribosomal protein S13P (rps13P); Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family.
 
     0.404
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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