Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BB_0004Phosphoglucomutase; Identified by match to protein family HMM PF02878. (589 aa)    
Predicted Functional Partners:
dacA
Conserved hypothetical protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
   
 
 0.840
BB_0381
Trehalase.
  
 
 0.805
BB_0537
Tetratricopeptide repeat domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
   
 0.785
BB_0791
Thymidine kinase.
 
   
 0.743
BB_0455
DNA polymerase III, delta subunit superfamily; Identified by match to protein family HMM PF06144.
 
     0.738
fliI
Flagellar protein export ATPase FliI; Probable catalytic subunit of a protein translocase for flagellum-specific export, or a proton translocase involved in local circuits at the flagellum. May be involved in a specialized protein export pathway that proceeds without signal peptide cleavage.
    
 
 0.723
BB_0400
Conserved hypothetical protein.
  
  
 0.718
cmk2
Cytidylate kinase; Identified by match to protein family HMM TIGR02173.
  
     0.711
BB_0103
Phosphoribosyl transferase domain protein.
  
     0.689
BB_0808
Putative permease, YjgP/YjgQ family; Identified by match to protein family HMM PF03739.
  
     0.665
Your Current Organism:
Borreliella burgdorferi
NCBI taxonomy Id: 224326
Other names: B. burgdorferi B31, Borrelia burgdorferi B31, Borrelia burgdorferi str. B31, Borreliella burgdorferi B31
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