Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BB_0019Conserved hypothetical protein. (170 aa)    
Predicted Functional Partners:
BB_0353
Membrane protein, putative.
      
 0.694
BB_0027
Conserved hypothetical protein.
     
 0.689
BB_0298
Tetratricopeptide repeat domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
      
 0.606
BB_0144
Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein; Identified by match to protein family HMM PF04069.
      
 0.549
BB_0843
Arginine-ornithine antiporter; Identified by match to protein family HMM PF03606; match to protein family HMM PF06808.
      
 0.548
ruvB
Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
       0.537
BB_0262
M23 peptidase domain protein; Identified by match to protein family HMM PF01476; match to protein family HMM PF01551.
      
 0.530
uppP
Undecaprenol kinase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
      
 0.516
BB_0319
Identified by match to protein family HMM PF02608.
      
 0.507
BB_0379
Protein kinase C1 inhibitor; Identified by match to protein family HMM PF01230.
      
 0.506
Your Current Organism:
Borreliella burgdorferi
NCBI taxonomy Id: 224326
Other names: B. burgdorferi B31, Borrelia burgdorferi B31, Borrelia burgdorferi str. B31, Borreliella burgdorferi B31
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