Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BB_0145Glycine betaine, L-proline ABC transporter, permease protein; Identified by match to protein family HMM PF00528. (299 aa)    
Predicted Functional Partners:
BB_0144
Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein; Identified by match to protein family HMM PF04069.
 
 0.999
BB_0146
Glycine betaine, L-proline ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.999
fla
P41; Component of the core of the flagella.
     
 0.802
nagA
N-acetylglucosamine-6-phosphate deacetylase; Identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221.
     
 0.680
polA
DNA polymerase I superfamily; In addition to polymerase activity, this DNA polymerase exhibits 3'-5' and 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
       0.652
pstS
Phosphate ABC transporter, periplasmic phosphate-binding protein; Binds inorganic phosphate with a Kd of 1.2 uM. Part of the ABC transporter complex PstSACB involved in phosphate import (Probable).
     
 0.646
BB_0807
Conserved hypothetical integral membrane protein; Identified by match to protein family HMM PF03739.
     
  0.540
BB_0808
Putative permease, YjgP/YjgQ family; Identified by match to protein family HMM PF03739.
     
  0.540
rplQ
Ribosomal protein L17; Identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059.
   
    0.479
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
    0.479
Your Current Organism:
Borreliella burgdorferi
NCBI taxonomy Id: 224326
Other names: B. burgdorferi B31, Borrelia burgdorferi B31, Borrelia burgdorferi str. B31, Borreliella burgdorferi B31
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