STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bmpCBasic membrane protein C (bmpC); Identified by match to protein family HMM PF02608. (353 aa)    
Predicted Functional Partners:
BB_0678
Ribose/galactose ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.929
rbsA
Sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.913
BB_0679
Ribose/galactose ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.898
bmpA
Basic membrane protein A (bmpA), immunodominant antigen P39; Not known; immunogenic protein; Belongs to the BMP lipoprotein family.
 
   
0.838
rpsL
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
     
 0.750
rpsG
Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
     
 0.668
bmpD
Basic membrane protein D (bmpD); Identified by match to protein family HMM PF02608.
 
   
0.617
bmpB
Basic membrane protein B (bmpB); Identified by match to protein family HMM PF02608.
 
   
0.595
lspA
Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
      
 0.531
BB_0108
Basic membrane protein; Identified by match to protein family HMM PF00639; match to protein family HMM PF09312.
      
 0.479
Your Current Organism:
Borreliella burgdorferi
NCBI taxonomy Id: 224326
Other names: B. burgdorferi B31, Borrelia burgdorferi B31, Borrelia burgdorferi str. B31, Borreliella burgdorferi B31
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.