Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BB_0732Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. (932 aa)    
Predicted Functional Partners:
BB_0136
Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793.
 
 
 0.968
BB_0718
Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423.
 
 
0.948
BB_0605
Serine-type D-Ala-D-Ala carboxypeptidase; Identified by match to protein family HMM PF00768; match to protein family HMM PF07943; Belongs to the peptidase S11 family.
     
 0.930
BB_0582
Carboxypeptidase, putative; Identified by match to protein family HMM PF02557.
     
  0.900
BB_0731
Conserved hypothetical protein; Identified by match to protein family HMM PF02195.
       0.893
pgi
Glucose-6-phosphate isomerase; Identified by match to protein family HMM PF00342.
       0.794
BB_0729
Transporter, dicarboxylate/amino acid:cation (na+ or H+) symporter (daacs) family; Identified by match to protein family HMM PF00375; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
       0.619
cdr
CoA-disulfide reductase; Identified by similarity to EGAD:42404; match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR03385.
       0.593
BB_0262
M23 peptidase domain protein; Identified by match to protein family HMM PF01476; match to protein family HMM PF01551.
 
   
 0.557
mrdB
Rod shape-determining protein RodA; Identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210; Belongs to the SEDS family.
  
   
 0.547
Your Current Organism:
Borreliella burgdorferi
NCBI taxonomy Id: 224326
Other names: B. burgdorferi B31, Borrelia burgdorferi B31, Borrelia burgdorferi str. B31, Borreliella burgdorferi B31
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