BB_0733 protein (Borreliella burgdorferi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

BB_0733

Conserved hypothetical protein. (261 aa)

Predicted Functional Partners:

BB_0419

0.828

pdeA

0.826

BB_0221

0.542

bosR

0.504

rpoS

0.479

BB_0420

0.478

BB_0360

0.475

rpoN

0.468

BB_0764

0.444

Your Current Organism:

Borreliella burgdorferi

NCBI taxonomy Id: 224326
Other names: B. burgdorferi B31, Borrelia burgdorferi B31, Borrelia burgdorferi str. B31, Borreliella burgdorferi B31

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BB_0221	BB_0419	BB_0221	BB_0419	Flagellar motor switch protein; Identified by match to protein family HMM PF01706.	Response regulatory protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	0.756
BB_0221	BB_0420	BB_0221	BB_0420	Flagellar motor switch protein; Identified by match to protein family HMM PF01706.	Sensory transduction histidine kinase, putative; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	0.806
BB_0221	BB_0733	BB_0221	BB_0733	Flagellar motor switch protein; Identified by match to protein family HMM PF01706.	Conserved hypothetical protein.	0.542
BB_0221	pdeA	BB_0221	BB_0363	Flagellar motor switch protein; Identified by match to protein family HMM PF01706.	Periplasmic protein; Phosphodiesterase (PDE) that catalyzes the hydrolysis of cyclic diguanylate (c-di-GMP) to pGpG.	0.819
BB_0360	BB_0733	BB_0360	BB_0733	Conserved hypothetical protein.	Conserved hypothetical protein.	0.475
BB_0360	pdeA	BB_0360	BB_0363	Conserved hypothetical protein.	Periplasmic protein; Phosphodiesterase (PDE) that catalyzes the hydrolysis of cyclic diguanylate (c-di-GMP) to pGpG.	0.955
BB_0419	BB_0221	BB_0419	BB_0221	Response regulatory protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	Flagellar motor switch protein; Identified by match to protein family HMM PF01706.	0.756
BB_0419	BB_0420	BB_0419	BB_0420	Response regulatory protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	Sensory transduction histidine kinase, putative; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	0.999
BB_0419	BB_0733	BB_0419	BB_0733	Response regulatory protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	Conserved hypothetical protein.	0.828
BB_0419	BB_0764	BB_0419	BB_0764	Response regulatory protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	Sensory transduction histidine kinase, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.760
BB_0419	pdeA	BB_0419	BB_0363	Response regulatory protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	Periplasmic protein; Phosphodiesterase (PDE) that catalyzes the hydrolysis of cyclic diguanylate (c-di-GMP) to pGpG.	0.994
BB_0419	rpoN	BB_0419	BB_0450	Response regulatory protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	RNA polymerase sigma-54 factor; Identified by match to protein family HMM PF00309; match to protein family HMM PF04552; match to protein family HMM PF04963; match to protein family HMM TIGR02395.	0.484
BB_0419	rpoS	BB_0419	BB_0771	Response regulatory protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	RNA polymerase sigma factor (rpoS); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.439
BB_0420	BB_0221	BB_0420	BB_0221	Sensory transduction histidine kinase, putative; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	Flagellar motor switch protein; Identified by match to protein family HMM PF01706.	0.806
BB_0420	BB_0419	BB_0420	BB_0419	Sensory transduction histidine kinase, putative; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	Response regulatory protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	0.999
BB_0420	BB_0733	BB_0420	BB_0733	Sensory transduction histidine kinase, putative; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	Conserved hypothetical protein.	0.478
BB_0420	BB_0764	BB_0420	BB_0764	Sensory transduction histidine kinase, putative; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	Sensory transduction histidine kinase, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.778
BB_0420	bosR	BB_0420	BB_0647	Sensory transduction histidine kinase, putative; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	Borrelia oxidative stress regulator protein BosR; Identified by match to protein family HMM PF01475; Belongs to the Fur family.	0.647
BB_0420	pdeA	BB_0420	BB_0363	Sensory transduction histidine kinase, putative; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	Periplasmic protein; Phosphodiesterase (PDE) that catalyzes the hydrolysis of cyclic diguanylate (c-di-GMP) to pGpG.	0.839
BB_0420	rpoN	BB_0420	BB_0450	Sensory transduction histidine kinase, putative; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.	RNA polymerase sigma-54 factor; Identified by match to protein family HMM PF00309; match to protein family HMM PF04552; match to protein family HMM PF04963; match to protein family HMM TIGR02395.	0.634