STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Abm4_0249PUA domain-containing protein. (304 aa)    
Predicted Functional Partners:
Abm4_1419
Radical SAM domain-containing protein.
 
     0.770
tgtA
Archaeosine tRNA-ribosyltransferase TgtA; Exchanges the guanine residue with 7-cyano-7-deazaguanine (preQ0) at position 15 in the dihydrouridine loop (D-loop) of archaeal tRNAs; Belongs to the archaeosine tRNA-ribosyltransferase family.
 
  
0.769
rpl40e
Ribosomal protein L40e Rpl40e; Belongs to the eukaryotic ribosomal protein eL40 family.
  
     0.715
Abm4_0248
Hypothetical protein.
 
     0.709
Abm4_1207
Hypothetical protein; Belongs to the UPF0179 family.
  
     0.697
rps24e
Ribosomal protein S24e Rps24e; Belongs to the eukaryotic ribosomal protein eS24 family.
  
     0.682
Abm4_1392
NMD3 family protein.
  
     0.670
Abm4_0515
Hypothetical protein.
  
     0.666
Abm4_1640
Hypothetical protein.
  
     0.665
Abm4_0412
HTH domain-containing protein.
  
     0.647
Your Current Organism:
Methanobrevibacter sp. AbM4
NCBI taxonomy Id: 224719
Other names: M. sp. AbM4
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