STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AND88166.1Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)    
Predicted Functional Partners:
AND88165.1
Hydroxyquinol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.764
AND88169.1
Stress responsive protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.741
AND88167.1
Cytosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.731
macA
Maleylacetate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.731
AND88161.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.
       0.583
AND88164.1
Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.583
AND88162.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.
       0.581
AND88163.1
Sugar ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.580
AND88170.1
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
       0.514
AND88160.1
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.490
Your Current Organism:
Bradyrhizobium diazoefficiens
NCBI taxonomy Id: 224911
Other names: B. diazoefficiens USDA 110, Bradyrhizobium diazoefficiens USDA 110, Bradyrhizobium japonicum USDA 110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.