STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cycCCytochrome C555; Low-spin monoheme cytochrome. (149 aa)    
Predicted Functional Partners:
cycA
Cystathionine beta-lyase; Plays a role in bacteroid respiration under conditions of oxygen limitation. Required for electron-transfer during denitrification.
   
  
 0.727
cycB
Cytochrome C552; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome c family.
  
  
 0.672
soxW
Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.595
AND91061.1
Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.558
nirK
Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the multicopper oxidase family.
 
   
 0.527
fbp-2
Fructose 1,6-bisphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.510
soxB-2
5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family.
     
  0.499
napB
Nitrate reductase; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family.
      
 0.499
soxY-2
Sulfur oxidation protein SoxY; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.495
cy2
Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.468
Your Current Organism:
Bradyrhizobium diazoefficiens
NCBI taxonomy Id: 224911
Other names: B. diazoefficiens USDA 110, Bradyrhizobium diazoefficiens USDA 110, Bradyrhizobium japonicum USDA 110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.