STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nodUNodulation protein NodU; Involved in 6-O-carbamoylation of Nod-factors. (569 aa)    
Predicted Functional Partners:
nodJ
Nodulation protein NodJ; Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit encodes the transporter (By similarity).
 
   
 0.931
nodI-2
ABC transporter ATP-binding protein; Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system.
 
   
 0.927
nodC
N-acetylglucosaminyltransferase; May be involved in the synthesis of NodRm-1, a sulfated N- acyl-beta-1,4-tetrasaccharide of N-acetylglucosamine which initiates a series of events in the host plant species leading eventually to nodulation; Belongs to the NodC/HAS family.
 
   
 0.924
nodS
SAM-dependent methlyltransferase; SAM-utilizing methyltransferase involved in nod factor synthesis.
 
   
 0.918
nodA
Acyltransferase; N-acyltransferase required for nodulation. Acts in the production of a small, heat-stable compound (Nod) that stimulates mitosis in various plant protoplasts; Belongs to the NodA family.
     
 0.912
nolN
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.899
nodB
Chitooligosaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.885
nodY
NodY; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.828
nodZ
Nodulation protein NodZ; Fucosyltransferase which adds the fucose moiety of the nod factor on its terminal reducing N-acetylglucosamine end. Uses GDP- fucose as the donor group.
     
 0.808
nodD1
LysR family transcriptional regulator; NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers (By similarity).
 
  
 0.784
Your Current Organism:
Bradyrhizobium diazoefficiens
NCBI taxonomy Id: 224911
Other names: B. diazoefficiens USDA 110, Bradyrhizobium diazoefficiens USDA 110, Bradyrhizobium japonicum USDA 110
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.