fixX protein (Bradyrhizobium diazoefficiens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

fixX

Ferredoxin; Could be a 3Fe-4S cluster-containing protein. (98 aa)

Predicted Functional Partners:

fixB

0.997

fixC

0.993

fixA

0.992

etfA

0.954

etfB

0.925

AND87564.1

0.910

nifW

0.807

AND88021.1

0.785

nifB

0.777

fixU

0.743

Your Current Organism:

Bradyrhizobium diazoefficiens

NCBI taxonomy Id: 224911
Other names: B. diazoefficiens USDA 110, Bradyrhizobium diazoefficiens USDA 110, Bradyrhizobium japonicum USDA 110

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AND87564.1	AND88021.1	AAV28_06890	AAV28_09555	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.	0.982
AND87564.1	etfA	AAV28_06890	AAV28_03800	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Electron transfer flavoprotein subunit beta; The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity).	0.964
AND87564.1	fixB	AAV28_06890	AAV28_05790	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Electron transfer flavoprotein subunit alpha; May play a role in a redox process involved in nitrogen fixation; Belongs to the ETF alpha-subunit/FixB family.	0.964
AND87564.1	fixC	AAV28_06890	AAV28_05795	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein fixC; Could be required for the formation of a functional nitrogenase Fe protein. Probably accepts electrons from FixA/FixB and reduces a quinone; Belongs to the ETF-QO/FixC family.	0.793
AND87564.1	fixX	AAV28_06890	AAV28_05800	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Could be a 3Fe-4S cluster-containing protein.	0.910
AND88021.1	AND87564.1	AAV28_09555	AAV28_06890	Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
AND88021.1	etfA	AAV28_09555	AAV28_03800	Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.	Electron transfer flavoprotein subunit beta; The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity).	0.996
AND88021.1	etfB	AAV28_09555	AAV28_03795	Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.	Electron transfer flavoprotein subunit beta; The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity).	0.995
AND88021.1	fixA	AAV28_09555	AAV28_07030	Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.	Protein fixA; May play a role in a redox process involved in nitrogen fixation; Belongs to the ETF beta-subunit/FixA family.	0.987
AND88021.1	fixB	AAV28_09555	AAV28_05790	Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.	Electron transfer flavoprotein subunit alpha; May play a role in a redox process involved in nitrogen fixation; Belongs to the ETF alpha-subunit/FixB family.	0.988
AND88021.1	fixC	AAV28_09555	AAV28_05795	Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.	Protein fixC; Could be required for the formation of a functional nitrogenase Fe protein. Probably accepts electrons from FixA/FixB and reduces a quinone; Belongs to the ETF-QO/FixC family.	0.818
AND88021.1	fixX	AAV28_09555	AAV28_05800	Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.	Ferredoxin; Could be a 3Fe-4S cluster-containing protein.	0.785
AND88021.1	nifW	AAV28_09555	AAV28_05780	Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.	Nitrogenase stabilizing/protective protein; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.	0.550
etfA	AND87564.1	AAV28_03800	AAV28_06890	Electron transfer flavoprotein subunit beta; The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity).	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
etfA	AND88021.1	AAV28_03800	AAV28_09555	Electron transfer flavoprotein subunit beta; The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity).	Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.	0.996
etfA	etfB	AAV28_03800	AAV28_03795	Electron transfer flavoprotein subunit beta; The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity).	Electron transfer flavoprotein subunit beta; The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity).	0.999
etfA	fixA	AAV28_03800	AAV28_07030	Electron transfer flavoprotein subunit beta; The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity).	Protein fixA; May play a role in a redox process involved in nitrogen fixation; Belongs to the ETF beta-subunit/FixA family.	0.994
etfA	fixB	AAV28_03800	AAV28_05790	Electron transfer flavoprotein subunit beta; The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity).	Electron transfer flavoprotein subunit alpha; May play a role in a redox process involved in nitrogen fixation; Belongs to the ETF alpha-subunit/FixB family.	0.462
etfA	fixC	AAV28_03800	AAV28_05795	Electron transfer flavoprotein subunit beta; The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity).	Protein fixC; Could be required for the formation of a functional nitrogenase Fe protein. Probably accepts electrons from FixA/FixB and reduces a quinone; Belongs to the ETF-QO/FixC family.	0.832
etfA	fixX	AAV28_03800	AAV28_05800	Electron transfer flavoprotein subunit beta; The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity).	Ferredoxin; Could be a 3Fe-4S cluster-containing protein.	0.954