STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yciCHypothetical protein. (250 aa)    
Predicted Functional Partners:
yfgM
Hypothetical protein.
  
   
 0.841
ispZ
Putative intracellular septation protein; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
  
    0.832
yhfC
Putative transport; COG0477.
  
     0.773
ychA
Hypothetical protein ychA; COG2912; Belongs to the UPF0162 family.
  
     0.750
uspA
Universal stress protein; Required for resistance to DNA-damaging agents.
  
     0.735
dsbA
Thiol:disulfide interchange protein DsbA precursor; Involved in disulfide-bond formation. Acts by transferring its disulfide bond to other proteins (By similarity).
  
     0.704
ppiD
Peptidyl-prolyl cis-trans isomerase D; PPIases accelerate the folding of proteins.
  
     0.672
yheL
Hypothetical protein; Part of a sulfur-relay system required for 2-thiolation of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions.
  
     0.652
yciA
Putative acyl-CoA thioester hydrolase YciA; COG1607; P14 protein; Belongs to the acyl coenzyme A hydrolase family.
     
 0.606
holA
DNA polymerase III delta subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The delta subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA (By similarity).
  
     0.595
Your Current Organism:
Buchnera aphidicola Bp
NCBI taxonomy Id: 224915
Other names: B. aphidicola str. Bp (Baizongia pistaciae), Buchnera aphidicola (subsp. Baizongia pistaciae), Buchnera aphidicola str. Bp (Baizongia pistaciae)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.