STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TSYNT_515Unannotated protein. (68 aa)    
Predicted Functional Partners:
smpB
Unannotated protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]
       0.686
TSYNT_770
Unannotated protein; Belongs to the uroporphyrinogen decarboxylase family.
  
     0.558
TSYNT_513
Unannotated protein; Belongs to the methyltransferase superfamily.
       0.557
TSYNT_91
Unannotated protein; Belongs to the uroporphyrinogen decarboxylase family.
  
     0.530
TSYNT_71
Unannotated protein; Belongs to the uroporphyrinogen decarboxylase family.
  
     0.529
TSYNT_5433
Unannotated protein.
  
     0.499
TSYNT_6160
Unannotated protein.
 
     0.457
TSYNT_6163
Unannotated protein.
 
     0.435
TSYNT_5461
Unannotated protein.
  
     0.416
TSYNT_7335
Unannotated protein.
       0.410
Your Current Organism:
Tepidanaerobacter syntrophicus
NCBI taxonomy Id: 224999
Other names: DSM 15584, JCM 12098, NBRC 100060, T. syntrophicus, Tepidanaerobacter syntrophicus Sekiguchi et al. 2006, anaerobic syntrophic bacterium JE, anaerobic syntrophic bacterium JL, anaerobic syntrophic bacterium OL, strain JL
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