STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TSYNT_5164Unannotated protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (459 aa)    
Predicted Functional Partners:
TSYNT_9235
Unannotated protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
      0.879
TSYNT_9327
Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
 
  
 0.692
murB
Unannotated protein; Cell wall formation.
  
  
 0.665
whiA
Unannotated protein; Involved in cell division and chromosome segregation.
     
 0.651
ispH
Unannotated protein; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
  
    0.643
TSYNT_99
Unannotated protein; Belongs to the methylenetetrahydrofolate reductase family.
     
 0.614
pfkA
Unannotated protein; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.
     
 0.602
TSYNT_5315
Unannotated protein; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
 
  
 0.562
TSYNT_5275
Unannotated protein; Belongs to the pyruvate kinase family.
 
   
 0.534
pheT
Unannotated protein; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
 
    0.508
Your Current Organism:
Tepidanaerobacter syntrophicus
NCBI taxonomy Id: 224999
Other names: DSM 15584, JCM 12098, NBRC 100060, T. syntrophicus, Tepidanaerobacter syntrophicus Sekiguchi et al. 2006, anaerobic syntrophic bacterium JE, anaerobic syntrophic bacterium JL, anaerobic syntrophic bacterium OL, strain JL
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