STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hutUUnannotated protein; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. (673 aa)    
Predicted Functional Partners:
hutI
Unannotated protein.
 
 0.999
hutH
Unannotated protein.
 
 0.999
TSYNT_5228
Unannotated protein.
 
    0.918
TSYNT_7265
Unannotated protein.
  
 
 0.870
TSYNT_915
Unannotated protein.
  
 
 0.870
TSYNT_5230
Unannotated protein.
       0.625
fhs
Unannotated protein; Belongs to the formate--tetrahydrofolate ligase family.
     
 0.565
TSYNT_5225
Unannotated protein.
       0.540
TSYNT_5462
Unannotated protein.
     
 0.530
TSYNT_9414
Unannotated protein; Belongs to the arginase family.
  
  
 0.497
Your Current Organism:
Tepidanaerobacter syntrophicus
NCBI taxonomy Id: 224999
Other names: DSM 15584, JCM 12098, NBRC 100060, T. syntrophicus, Tepidanaerobacter syntrophicus Sekiguchi et al. 2006, anaerobic syntrophic bacterium JE, anaerobic syntrophic bacterium JL, anaerobic syntrophic bacterium OL, strain JL
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.