Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
TSYNT_5272 | TSYNT_6180 | GCA_001485475_00427 | GCA_001485475_00806 | Unannotated protein. | Unannotated protein. | 0.418 |
TSYNT_5272 | TSYNT_6367 | GCA_001485475_00427 | GCA_001485475_00991 | Unannotated protein. | Unannotated protein. | 0.791 |
TSYNT_6178 | TSYNT_6179 | GCA_001485475_00804 | GCA_001485475_00805 | Unannotated protein. | Unannotated protein. | 0.845 |
TSYNT_6178 | TSYNT_6180 | GCA_001485475_00804 | GCA_001485475_00806 | Unannotated protein. | Unannotated protein. | 0.787 |
TSYNT_6178 | TSYNT_6182 | GCA_001485475_00804 | GCA_001485475_00808 | Unannotated protein. | Unannotated protein. | 0.782 |
TSYNT_6178 | glmU | GCA_001485475_00804 | GCA_001485475_00802 | Unannotated protein. | Unannotated protein; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. | 0.775 |
TSYNT_6178 | ispE | GCA_001485475_00804 | GCA_001485475_00807 | Unannotated protein. | Unannotated protein; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | 0.838 |
TSYNT_6178 | prs | GCA_001485475_00804 | GCA_001485475_00801 | Unannotated protein. | Unannotated protein; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.758 |
TSYNT_6178 | spoVG | GCA_001485475_00804 | GCA_001485475_00803 | Unannotated protein. | Unannotated protein; Could be involved in septation. | 0.656 |
TSYNT_6179 | TSYNT_6178 | GCA_001485475_00805 | GCA_001485475_00804 | Unannotated protein. | Unannotated protein. | 0.845 |
TSYNT_6179 | TSYNT_6180 | GCA_001485475_00805 | GCA_001485475_00806 | Unannotated protein. | Unannotated protein. | 0.860 |
TSYNT_6179 | TSYNT_6182 | GCA_001485475_00805 | GCA_001485475_00808 | Unannotated protein. | Unannotated protein. | 0.569 |
TSYNT_6179 | glmU | GCA_001485475_00805 | GCA_001485475_00802 | Unannotated protein. | Unannotated protein; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. | 0.599 |
TSYNT_6179 | ispE | GCA_001485475_00805 | GCA_001485475_00807 | Unannotated protein. | Unannotated protein; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | 0.844 |
TSYNT_6179 | prs | GCA_001485475_00805 | GCA_001485475_00801 | Unannotated protein. | Unannotated protein; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.592 |
TSYNT_6179 | spoVG | GCA_001485475_00805 | GCA_001485475_00803 | Unannotated protein. | Unannotated protein; Could be involved in septation. | 0.582 |
TSYNT_6180 | TSYNT_5272 | GCA_001485475_00806 | GCA_001485475_00427 | Unannotated protein. | Unannotated protein. | 0.418 |
TSYNT_6180 | TSYNT_6178 | GCA_001485475_00806 | GCA_001485475_00804 | Unannotated protein. | Unannotated protein. | 0.787 |
TSYNT_6180 | TSYNT_6179 | GCA_001485475_00806 | GCA_001485475_00805 | Unannotated protein. | Unannotated protein. | 0.860 |
TSYNT_6180 | TSYNT_6182 | GCA_001485475_00806 | GCA_001485475_00808 | Unannotated protein. | Unannotated protein. | 0.562 |
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