Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
TSYNT_7275 | TSYNT_7297 | GCA_001485475_01272 | GCA_001485475_01293 | Unannotated protein. | Unannotated protein. | 0.609 |
TSYNT_7275 | TSYNT_7299 | GCA_001485475_01272 | GCA_001485475_01295 | Unannotated protein. | Unannotated protein. | 0.410 |
TSYNT_7275 | guaA | GCA_001485475_01272 | GCA_001485475_01119 | Unannotated protein. | Unannotated protein; Catalyzes the synthesis of GMP from XMP. | 0.656 |
TSYNT_7296 | TSYNT_7297 | GCA_001485475_01292 | GCA_001485475_01293 | Unannotated protein. | Unannotated protein. | 0.554 |
TSYNT_7296 | TSYNT_7298 | GCA_001485475_01292 | GCA_001485475_01294 | Unannotated protein. | Unannotated protein. | 0.450 |
TSYNT_7297 | TSYNT_7275 | GCA_001485475_01293 | GCA_001485475_01272 | Unannotated protein. | Unannotated protein. | 0.609 |
TSYNT_7297 | TSYNT_7296 | GCA_001485475_01293 | GCA_001485475_01292 | Unannotated protein. | Unannotated protein. | 0.554 |
TSYNT_7297 | TSYNT_7298 | GCA_001485475_01293 | GCA_001485475_01294 | Unannotated protein. | Unannotated protein. | 0.581 |
TSYNT_7297 | TSYNT_7299 | GCA_001485475_01293 | GCA_001485475_01295 | Unannotated protein. | Unannotated protein. | 0.581 |
TSYNT_7297 | TSYNT_8100 | GCA_001485475_01293 | GCA_001485475_01601 | Unannotated protein. | Unannotated protein. | 0.669 |
TSYNT_7297 | cmk | GCA_001485475_01293 | GCA_001485475_02198 | Unannotated protein. | Unannotated protein. | 0.498 |
TSYNT_7297 | fusA | GCA_001485475_01293 | GCA_001485475_00703 | Unannotated protein. | Unannotated protein; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.669 |
TSYNT_7297 | guaA | GCA_001485475_01293 | GCA_001485475_01119 | Unannotated protein. | Unannotated protein; Catalyzes the synthesis of GMP from XMP. | 0.502 |
TSYNT_7297 | nnrE | GCA_001485475_01293 | GCA_001485475_01269 | Unannotated protein. | Unannotated protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...] | 0.531 |
TSYNT_7297 | rph | GCA_001485475_01293 | GCA_001485475_00525 | Unannotated protein. | Unannotated protein; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.496 |
TSYNT_7298 | TSYNT_7296 | GCA_001485475_01294 | GCA_001485475_01292 | Unannotated protein. | Unannotated protein. | 0.450 |
TSYNT_7298 | TSYNT_7297 | GCA_001485475_01294 | GCA_001485475_01293 | Unannotated protein. | Unannotated protein. | 0.581 |
TSYNT_7298 | TSYNT_7299 | GCA_001485475_01294 | GCA_001485475_01295 | Unannotated protein. | Unannotated protein. | 0.597 |
TSYNT_7299 | TSYNT_7275 | GCA_001485475_01295 | GCA_001485475_01272 | Unannotated protein. | Unannotated protein. | 0.410 |
TSYNT_7299 | TSYNT_7297 | GCA_001485475_01295 | GCA_001485475_01293 | Unannotated protein. | Unannotated protein. | 0.581 |
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