Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
TSYNT_5459 | TSYNT_7151 | GCA_001485475_00612 | GCA_001485475_01148 | Unannotated protein. | Unannotated protein; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family. | 0.919 |
TSYNT_5459 | TSYNT_7171 | GCA_001485475_00612 | GCA_001485475_01168 | Unannotated protein. | Unannotated protein. | 0.783 |
TSYNT_5459 | TSYNT_8188 | GCA_001485475_00612 | GCA_001485475_01688 | Unannotated protein. | Unannotated protein. | 0.514 |
TSYNT_5459 | TSYNT_8189 | GCA_001485475_00612 | GCA_001485475_01689 | Unannotated protein. | Unannotated protein; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family. | 0.903 |
TSYNT_5459 | TSYNT_8192 | GCA_001485475_00612 | GCA_001485475_01692 | Unannotated protein. | Unannotated protein. | 0.703 |
TSYNT_5459 | ldh | GCA_001485475_00612 | GCA_001485475_01718 | Unannotated protein. | Unannotated protein; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family. | 0.813 |
TSYNT_7135 | TSYNT_7151 | GCA_001485475_01132 | GCA_001485475_01148 | Unannotated protein. | Unannotated protein; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family. | 0.651 |
TSYNT_7135 | TSYNT_8189 | GCA_001485475_01132 | GCA_001485475_01689 | Unannotated protein. | Unannotated protein; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family. | 0.592 |
TSYNT_7135 | ldh | GCA_001485475_01132 | GCA_001485475_01718 | Unannotated protein. | Unannotated protein; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family. | 0.636 |
TSYNT_7151 | TSYNT_5459 | GCA_001485475_01148 | GCA_001485475_00612 | Unannotated protein; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family. | Unannotated protein. | 0.919 |
TSYNT_7151 | TSYNT_7135 | GCA_001485475_01148 | GCA_001485475_01132 | Unannotated protein; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family. | Unannotated protein. | 0.651 |
TSYNT_7151 | TSYNT_7171 | GCA_001485475_01148 | GCA_001485475_01168 | Unannotated protein; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family. | Unannotated protein. | 0.631 |
TSYNT_7151 | TSYNT_8188 | GCA_001485475_01148 | GCA_001485475_01688 | Unannotated protein; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family. | Unannotated protein. | 0.410 |
TSYNT_7151 | TSYNT_8189 | GCA_001485475_01148 | GCA_001485475_01689 | Unannotated protein; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family. | Unannotated protein; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family. | 0.738 |
TSYNT_7151 | TSYNT_8190 | GCA_001485475_01148 | GCA_001485475_01690 | Unannotated protein; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family. | Unannotated protein. | 0.471 |
TSYNT_7151 | TSYNT_8191 | GCA_001485475_01148 | GCA_001485475_01691 | Unannotated protein; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family. | Unannotated protein. | 0.459 |
TSYNT_7151 | TSYNT_8192 | GCA_001485475_01148 | GCA_001485475_01692 | Unannotated protein; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family. | Unannotated protein. | 0.887 |
TSYNT_7151 | fni | GCA_001485475_01148 | GCA_001485475_02201 | Unannotated protein; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family. | Unannotated protein; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP). | 0.919 |
TSYNT_7151 | ldh | GCA_001485475_01148 | GCA_001485475_01718 | Unannotated protein; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family. | Unannotated protein; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family. | 0.993 |
TSYNT_7171 | TSYNT_5459 | GCA_001485475_01168 | GCA_001485475_00612 | Unannotated protein. | Unannotated protein. | 0.783 |
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