Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
TSYNT_6358 | TSYNT_887 | GCA_001485475_00982 | GCA_001485475_01589 | Unannotated protein. | Unannotated protein. | 0.872 |
TSYNT_6358 | TSYNT_9354 | GCA_001485475_00982 | GCA_001485475_02135 | Unannotated protein. | Unannotated protein. | 0.410 |
TSYNT_7497 | TSYNT_929 | GCA_001485475_01488 | GCA_001485475_01818 | Unannotated protein; Belongs to the sulfur carrier protein TusA family. | Unannotated protein. | 0.418 |
TSYNT_7497 | TSYNT_9354 | GCA_001485475_01488 | GCA_001485475_02135 | Unannotated protein; Belongs to the sulfur carrier protein TusA family. | Unannotated protein. | 0.568 |
TSYNT_7497 | alaS | GCA_001485475_01488 | GCA_001485475_02137 | Unannotated protein; Belongs to the sulfur carrier protein TusA family. | Unannotated protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.406 |
TSYNT_7497 | miaA | GCA_001485475_01488 | GCA_001485475_02216 | Unannotated protein; Belongs to the sulfur carrier protein TusA family. | Unannotated protein; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.652 |
TSYNT_7497 | tpiA | GCA_001485475_01488 | GCA_001485475_01138 | Unannotated protein; Belongs to the sulfur carrier protein TusA family. | Unannotated protein; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. | 0.575 |
TSYNT_887 | TSYNT_6358 | GCA_001485475_01589 | GCA_001485475_00982 | Unannotated protein. | Unannotated protein. | 0.872 |
TSYNT_887 | TSYNT_9354 | GCA_001485475_01589 | GCA_001485475_02135 | Unannotated protein. | Unannotated protein. | 0.410 |
TSYNT_887 | alaS | GCA_001485475_01589 | GCA_001485475_02137 | Unannotated protein. | Unannotated protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.410 |
TSYNT_887 | miaA | GCA_001485475_01589 | GCA_001485475_02216 | Unannotated protein. | Unannotated protein; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.510 |
TSYNT_887 | tpiA | GCA_001485475_01589 | GCA_001485475_01138 | Unannotated protein. | Unannotated protein; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. | 0.404 |
TSYNT_929 | TSYNT_7497 | GCA_001485475_01818 | GCA_001485475_01488 | Unannotated protein. | Unannotated protein; Belongs to the sulfur carrier protein TusA family. | 0.418 |
TSYNT_929 | TSYNT_9354 | GCA_001485475_01818 | GCA_001485475_02135 | Unannotated protein. | Unannotated protein. | 0.543 |
TSYNT_9354 | TSYNT_6358 | GCA_001485475_02135 | GCA_001485475_00982 | Unannotated protein. | Unannotated protein. | 0.410 |
TSYNT_9354 | TSYNT_7497 | GCA_001485475_02135 | GCA_001485475_01488 | Unannotated protein. | Unannotated protein; Belongs to the sulfur carrier protein TusA family. | 0.568 |
TSYNT_9354 | TSYNT_887 | GCA_001485475_02135 | GCA_001485475_01589 | Unannotated protein. | Unannotated protein. | 0.410 |
TSYNT_9354 | TSYNT_929 | GCA_001485475_02135 | GCA_001485475_01818 | Unannotated protein. | Unannotated protein. | 0.543 |
TSYNT_9354 | TSYNT_9355 | GCA_001485475_02135 | GCA_001485475_02136 | Unannotated protein. | Unannotated protein. | 0.699 |
TSYNT_9354 | alaS | GCA_001485475_02135 | GCA_001485475_02137 | Unannotated protein. | Unannotated protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.403 |
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