STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ42999.1Hypothetical protein. (635 aa)    
Predicted Functional Partners:
SJZ43019.1
Protein kinase domain-containing protein.
       0.773
SJZ43038.1
DNA-binding transcriptional regulator, XRE family.
       0.531
SJZ43064.1
Helicase conserved C-terminal domain-containing protein.
       0.531
SJZ43082.1
SNF2 family N-terminal domain-containing protein.
       0.521
SJZ43189.1
Predicted transcriptional regulator, contains HTH domain.
       0.521
SJZ43216.1
Hypothetical protein.
       0.521
SJZ43249.1
SIR2-like domain-containing protein.
       0.499
SJZ43270.1
Hypothetical protein.
       0.499
SJZ43293.1
Predicted transcriptional regulator, contains HTH domain.
       0.483
SJZ43320.1
HNH endonuclease.
       0.483
Your Current Organism:
Treponema berlinense
NCBI taxonomy Id: 225004
Other names: ATCC BAA-909, CIP 108244, JCM 12341, T. berlinense, Treponema berlinense Nordhoff et al. 2005, Treponema sp. 7CPL208, strain 7CPL208
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.