STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ44251.123S rRNA (uracil1939-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (413 aa)    
Predicted Functional Partners:
SJZ44281.1
Hypothetical protein.
       0.757
SJZ44218.1
Hypothetical protein.
       0.727
SJZ44160.1
P83/100 protein.
       0.592
SJZ44126.1
Ankyrin repeat.
   
 
 0.584
trmB
tRNA (guanine-N7-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
  
 0.571
SJZ82611.1
DNA repair protein RecN (Recombination protein N); May be involved in recombinational repair of damaged DNA.
  
  
 0.552
SJZ82085.1
GMP synthase (glutamine-hydrolysing).
 
  
 0.542
SJZ44303.1
Aspartate aminotransferase.
  
    0.534
SJZ44081.1
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD.
     
 0.526
glgA
Starch synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
       0.511
Your Current Organism:
Treponema berlinense
NCBI taxonomy Id: 225004
Other names: ATCC BAA-909, CIP 108244, JCM 12341, T. berlinense, Treponema berlinense Nordhoff et al. 2005, Treponema sp. 7CPL208, strain 7CPL208
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.