STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ78919.1DNA-damage-inducible protein J. (85 aa)    
Predicted Functional Partners:
SJZ78973.1
Toxin YoeB.
     
 0.782
SKA03611.1
DNA-damage-inducible protein J.
  
     0.745
SJZ60868.1
DNA-damage-inducible protein J.
  
     0.740
SJZ58334.1
Plasmid stabilization system protein ParE.
 
 
   0.701
SKA03631.1
mRNA interferase YafQ.
 
 
 0.583
SJZ60889.1
mRNA interferase YafQ.
 
 
 0.582
SJZ93503.1
mRNA interferase YafQ.
 
 
 0.578
SJZ67061.1
mRNA interferase YafQ.
 
 
 0.561
SJZ78865.1
IMP cyclohydrolase-like protein.
       0.550
SJZ78906.1
Protein of unknown function.
       0.550
Your Current Organism:
Treponema berlinense
NCBI taxonomy Id: 225004
Other names: ATCC BAA-909, CIP 108244, JCM 12341, T. berlinense, Treponema berlinense Nordhoff et al. 2005, Treponema sp. 7CPL208, strain 7CPL208
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.