STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ79035.1Flavodoxin, short chain. (130 aa)    
Predicted Functional Partners:
SJZ79004.1
Protein of unknown function.
 
     0.949
SJZ63666.1
Superoxide reductase.
  
  
 0.658
SJZ60901.1
Hemerythrin.
  
  
 0.644
SJZ80659.1
Diguanylate cyclase (GGDEF) domain-containing protein.
    
  0.621
rpsU
Small subunit ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
       0.526
SJZ99250.1
Multimeric flavodoxin WrbA.
  
 
  0.460
SKA07437.1
Glutamine synthetase.
     
 0.427
SJZ78865.1
IMP cyclohydrolase-like protein.
 
     0.422
Your Current Organism:
Treponema berlinense
NCBI taxonomy Id: 225004
Other names: ATCC BAA-909, CIP 108244, JCM 12341, T. berlinense, Treponema berlinense Nordhoff et al. 2005, Treponema sp. 7CPL208, strain 7CPL208
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.