STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ82761.1Peptidase family M23. (286 aa)    
Predicted Functional Partners:
SKA05381.1
Uncharacterized protein YPO0396.
  
   0.850
SJZ82781.1
Hypothetical protein.
       0.771
SJZ42080.1
Purine-binding chemotaxis protein CheW.
    
  0.712
SJZ43019.1
Protein kinase domain-containing protein.
  
 
 0.584
SJZ46609.1
TPR repeat-containing protein.
   
   0.540
SJZ84416.1
Tetratricopeptide repeat-containing protein.
   
   0.540
SKA04114.1
Hypothetical protein.
   
   0.540
SJZ82785.1
PTS system, nitrogen regulatory IIA component.
       0.488
SJZ82739.1
Phosphoglucomutase.
       0.461
SJZ82718.1
Phosphoglucomutase.
       0.432
Your Current Organism:
Treponema berlinense
NCBI taxonomy Id: 225004
Other names: ATCC BAA-909, CIP 108244, JCM 12341, T. berlinense, Treponema berlinense Nordhoff et al. 2005, Treponema sp. 7CPL208, strain 7CPL208
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.