V3Z0S8_LOTGI protein (Lottia gigantea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V3Z0S8_LOTGI

Folate gamma-glutamyl hydrolase. (319 aa)

Predicted Functional Partners:

V3Z6K0_LOTGI

0.944

V3ZI95_LOTGI

0.920

V3ZNC2_LOTGI

0.917

V4B0F1_LOTGI

0.551

V3ZMH1_LOTGI

0.540

V4A5H6_LOTGI

0.540

V4AF38_LOTGI

0.534

V4B167_LOTGI

0.468

V3ZNU5_LOTGI

0.438

Your Current Organism:

Lottia gigantea

NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V3Z0S8_LOTGI	V3Z6K0_LOTGI	V3Z0S8	V3Z6K0	Folate gamma-glutamyl hydrolase.	Uncharacterized protein.	0.944
V3Z0S8_LOTGI	V3ZI95_LOTGI	V3Z0S8	V3ZI95	Folate gamma-glutamyl hydrolase.	DHFR domain-containing protein; Belongs to the dihydrofolate reductase family.	0.920
V3Z0S8_LOTGI	V3ZMH1_LOTGI	V3Z0S8	V3ZMH1	Folate gamma-glutamyl hydrolase.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.540
V3Z0S8_LOTGI	V3ZNC2_LOTGI	V3Z0S8	V3ZNC2	Folate gamma-glutamyl hydrolase.	DHFR domain-containing protein.	0.917
V3Z0S8_LOTGI	V3ZNU5_LOTGI	V3Z0S8	V3ZNU5	Folate gamma-glutamyl hydrolase.	CUE domain-containing protein.	0.438
V3Z0S8_LOTGI	V4A5H6_LOTGI	V3Z0S8	V4A5H6	Folate gamma-glutamyl hydrolase.	MGS domain-containing protein.	0.540
V3Z0S8_LOTGI	V4AF38_LOTGI	V3Z0S8	V4AF38	Folate gamma-glutamyl hydrolase.	BRCT domain-containing protein.	0.534
V3Z0S8_LOTGI	V4B0F1_LOTGI	V3Z0S8	V4B0F1	Folate gamma-glutamyl hydrolase.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.551
V3Z0S8_LOTGI	V4B167_LOTGI	V3Z0S8	V4B167	Folate gamma-glutamyl hydrolase.	Rep_fac-A_C domain-containing protein.	0.468
V3Z6K0_LOTGI	V3Z0S8_LOTGI	V3Z6K0	V3Z0S8	Uncharacterized protein.	Folate gamma-glutamyl hydrolase.	0.944
V3Z6K0_LOTGI	V3ZI95_LOTGI	V3Z6K0	V3ZI95	Uncharacterized protein.	DHFR domain-containing protein; Belongs to the dihydrofolate reductase family.	0.988
V3Z6K0_LOTGI	V3ZNC2_LOTGI	V3Z6K0	V3ZNC2	Uncharacterized protein.	DHFR domain-containing protein.	0.987
V3Z6K0_LOTGI	V4A5H6_LOTGI	V3Z6K0	V4A5H6	Uncharacterized protein.	MGS domain-containing protein.	0.552
V3Z6K0_LOTGI	V4AF38_LOTGI	V3Z6K0	V4AF38	Uncharacterized protein.	BRCT domain-containing protein.	0.441
V3Z6K0_LOTGI	V4B0F1_LOTGI	V3Z6K0	V4B0F1	Uncharacterized protein.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.720
V3ZI95_LOTGI	V3Z0S8_LOTGI	V3ZI95	V3Z0S8	DHFR domain-containing protein; Belongs to the dihydrofolate reductase family.	Folate gamma-glutamyl hydrolase.	0.920
V3ZI95_LOTGI	V3Z6K0_LOTGI	V3ZI95	V3Z6K0	DHFR domain-containing protein; Belongs to the dihydrofolate reductase family.	Uncharacterized protein.	0.988
V3ZI95_LOTGI	V3ZNC2_LOTGI	V3ZI95	V3ZNC2	DHFR domain-containing protein; Belongs to the dihydrofolate reductase family.	DHFR domain-containing protein.	0.908
V3ZI95_LOTGI	V4A5H6_LOTGI	V3ZI95	V4A5H6	DHFR domain-containing protein; Belongs to the dihydrofolate reductase family.	MGS domain-containing protein.	0.943
V3ZI95_LOTGI	V4B0F1_LOTGI	V3ZI95	V4B0F1	DHFR domain-containing protein; Belongs to the dihydrofolate reductase family.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.972