STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V3ZDF5_LOTGICir_N domain-containing protein. (218 aa)    
Predicted Functional Partners:
V4AUL9_LOTGI
Uncharacterized protein.
    
 0.947
V4BSJ8_LOTGI
SKIP_SNW domain-containing protein.
   
 
 0.846
V4ABY9_LOTGI
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.829
V4ARS3_LOTGI
Uncharacterized protein.
   
 
 0.795
V4B2P9_LOTGI
Uncharacterized protein.
   
 
 0.742
V4B970_LOTGI
Uncharacterized protein.
    
 
 0.615
V4AVY2_LOTGI
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
 
      0.606
V4BBS5_LOTGI
Nkap_C domain-containing protein.
   
 
 0.605
V4BGP7_LOTGI
Uncharacterized protein.
   
 
 0.605
V4AA71_LOTGI
Uncharacterized protein.
   
 
 0.578
Your Current Organism:
Lottia gigantea
NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.