STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V3ZL80_LOTGIUncharacterized protein. (218 aa)    
Predicted Functional Partners:
V4AK84_LOTGI
Uncharacterized protein.
  
 
 0.846
V3ZZB0_LOTGI
DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.
    
 0.739
V4BQT5_LOTGI
DNA ligase.
   
 0.728
V4A2S4_LOTGI
Uncharacterized protein.
  
  
 0.666
V4A2J5_LOTGI
FPG_CAT domain-containing protein.
     
 0.611
V3ZHF0_LOTGI
Uncharacterized protein.
   
 0.593
V3ZIM4_LOTGI
BRCT domain-containing protein.
   
 0.593
V4AES0_LOTGI
XRCC1_N domain-containing protein.
   
 0.593
V4CSZ7_LOTGI
DNA ligase.
   
 0.579
V3ZP69_LOTGI
XRCC1_N domain-containing protein.
   
 0.576
Your Current Organism:
Lottia gigantea
NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet
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