STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V3ZTR9_LOTGIAA_TRNA_LIGASE_II domain-containing protein. (625 aa)    
Predicted Functional Partners:
V4AFT1_LOTGI
Tyrosine--tRNA ligase.
  
  
 0.958
V4B9C1_LOTGI
Uncharacterized protein.
  
 
 0.957
V3ZXW4_LOTGI
AA_TRNA_LIGASE_II domain-containing protein.
  
  
 
0.901
V3ZML9_LOTGI
AA_TRNA_LIGASE_II domain-containing protein.
   
  
 0.815
V4BBR9_LOTGI
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.695
V4AN00_LOTGI
AA_TRNA_LIGASE_II domain-containing protein.
  
  
 0.692
V4ARN8_LOTGI
POLAc domain-containing protein.
   
 
 0.677
V3ZMX5_LOTGI
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.662
V3ZXG9_LOTGI
tRNA-synt_1g domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.662
V4AII1_LOTGI
Tyrosine--tRNA ligase.
  
  
 0.646
Your Current Organism:
Lottia gigantea
NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet
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