V3ZV83_LOTGI protein (Lottia gigantea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V3ZV83_LOTGI

Uncharacterized protein. (406 aa)

Predicted Functional Partners:

V4ADS8_LOTGI

0.983

V4B1Z2_LOTGI

0.851

V3ZVR7_LOTGI

0.809

V3ZQL8_LOTGI

0.739

V3ZL90_LOTGI

0.692

V4AQQ7_LOTGI

0.692

V4BB59_LOTGI

0.692

V4CGR2_LOTGI

0.692

V4AKR5_LOTGI

0.683

V4A2E5_LOTGI

0.678

Your Current Organism:

Lottia gigantea

NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V3ZL90_LOTGI	V3ZV83_LOTGI	V3ZL90	V3ZV83	Uncharacterized protein.	Uncharacterized protein.	0.692
V3ZL90_LOTGI	V4A2E5_LOTGI	V3ZL90	V4A2E5	Uncharacterized protein.	Uncharacterized protein.	0.818
V3ZL90_LOTGI	V4AKR5_LOTGI	V3ZL90	V4AKR5	Uncharacterized protein.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.901
V3ZL90_LOTGI	V4AQQ7_LOTGI	V3ZL90	V4AQQ7	Uncharacterized protein.	Uncharacterized protein.	0.470
V3ZL90_LOTGI	V4BB59_LOTGI	V3ZL90	V4BB59	Uncharacterized protein.	Carboxyl_trans domain-containing protein.	0.470
V3ZL90_LOTGI	V4CGR2_LOTGI	V3ZL90	V4CGR2	Uncharacterized protein.	Uncharacterized protein.	0.903
V3ZQL8_LOTGI	V3ZV83_LOTGI	V3ZQL8	V3ZV83	Fumarylacetoacetase.	Uncharacterized protein.	0.739
V3ZQL8_LOTGI	V3ZVR7_LOTGI	V3ZQL8	V3ZVR7	Fumarylacetoacetase.	Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.	0.704
V3ZQL8_LOTGI	V4ADS8_LOTGI	V3ZQL8	V4ADS8	Fumarylacetoacetase.	Uncharacterized protein.	0.928
V3ZV83_LOTGI	V3ZL90_LOTGI	V3ZV83	V3ZL90	Uncharacterized protein.	Uncharacterized protein.	0.692
V3ZV83_LOTGI	V3ZQL8_LOTGI	V3ZV83	V3ZQL8	Uncharacterized protein.	Fumarylacetoacetase.	0.739
V3ZV83_LOTGI	V3ZVR7_LOTGI	V3ZV83	V3ZVR7	Uncharacterized protein.	Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.	0.809
V3ZV83_LOTGI	V4A2E5_LOTGI	V3ZV83	V4A2E5	Uncharacterized protein.	Uncharacterized protein.	0.678
V3ZV83_LOTGI	V4ADS8_LOTGI	V3ZV83	V4ADS8	Uncharacterized protein.	Uncharacterized protein.	0.983
V3ZV83_LOTGI	V4AKR5_LOTGI	V3ZV83	V4AKR5	Uncharacterized protein.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.683
V3ZV83_LOTGI	V4AQQ7_LOTGI	V3ZV83	V4AQQ7	Uncharacterized protein.	Uncharacterized protein.	0.692
V3ZV83_LOTGI	V4B1Z2_LOTGI	V3ZV83	V4B1Z2	Uncharacterized protein.	4-hydroxybenzoate polyprenyltransferase, mitochondrial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate.	0.851
V3ZV83_LOTGI	V4BB59_LOTGI	V3ZV83	V4BB59	Uncharacterized protein.	Carboxyl_trans domain-containing protein.	0.692
V3ZV83_LOTGI	V4CGR2_LOTGI	V3ZV83	V4CGR2	Uncharacterized protein.	Uncharacterized protein.	0.692
V3ZVR7_LOTGI	V3ZQL8_LOTGI	V3ZVR7	V3ZQL8	Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.	Fumarylacetoacetase.	0.704