STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4A0Y3_LOTGIMINDY_DUB domain-containing protein. (405 aa)    
Predicted Functional Partners:
V3ZXF8_LOTGI
SET domain-containing protein.
    
 0.539
V4AGI2_LOTGI
Protein-histidine N-methyltransferase.
    
 0.539
V4AHG9_LOTGI
B12-binding domain-containing protein.
    
 0.539
V4AAF6_LOTGI
Ubiquitin-like domain-containing protein.
    
   0.518
V4C357_LOTGI
Ubiquitin-like domain-containing protein.
    
   0.518
V4AQA5_LOTGI
Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.
 
      0.507
V4A5H8_LOTGI
Uncharacterized protein.
    
   0.485
V4A5I2_LOTGI
Uncharacterized protein.
    
   0.485
V4AG44_LOTGI
Uncharacterized protein.
    
   0.485
V4AUN8_LOTGI
Uncharacterized protein.
    
   0.485
Your Current Organism:
Lottia gigantea
NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.