V4A100_LOTGI protein (Lottia gigantea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V4A100_LOTGI

RPA43_OB domain-containing protein. (168 aa)

Predicted Functional Partners:

V3Z1P0_LOTGI

0.999

V3ZZG2_LOTGI

0.999

V4BH04_LOTGI

0.999

V4ABV0_LOTGI

0.998

V4ALU5_LOTGI

0.998

V4A0Z9_LOTGI

0.997

V4A3L1_LOTGI

0.997

V4B431_LOTGI

0.997

V4CQR2_LOTGI

0.997

V3ZFS1_LOTGI

0.988

Your Current Organism:

Lottia gigantea

NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V3Z1P0_LOTGI	V3ZFS1_LOTGI	V3Z1P0	V3ZFS1	RPOLD domain-containing protein.	Uncharacterized protein.	0.975
V3Z1P0_LOTGI	V3ZZG2_LOTGI	V3Z1P0	V3ZZG2	RPOLD domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
V3Z1P0_LOTGI	V4A0Z9_LOTGI	V3Z1P0	V4A0Z9	RPOLD domain-containing protein.	Uncharacterized protein.	0.999
V3Z1P0_LOTGI	V4A100_LOTGI	V3Z1P0	V4A100	RPOLD domain-containing protein.	RPA43_OB domain-containing protein.	0.999
V3Z1P0_LOTGI	V4A3L1_LOTGI	V3Z1P0	V4A3L1	RPOLD domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.999
V3Z1P0_LOTGI	V4ABV0_LOTGI	V3Z1P0	V4ABV0	RPOLD domain-containing protein.	Uncharacterized protein.	0.996
V3Z1P0_LOTGI	V4ALU5_LOTGI	V3Z1P0	V4ALU5	RPOLD domain-containing protein.	Uncharacterized protein.	0.999
V3Z1P0_LOTGI	V4B431_LOTGI	V3Z1P0	V4B431	RPOLD domain-containing protein.	Uncharacterized protein.	0.998
V3Z1P0_LOTGI	V4BH04_LOTGI	V3Z1P0	V4BH04	RPOLD domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
V3Z1P0_LOTGI	V4CQR2_LOTGI	V3Z1P0	V4CQR2	RPOLD domain-containing protein.	Uncharacterized protein.	0.999
V3ZFS1_LOTGI	V3Z1P0_LOTGI	V3ZFS1	V3Z1P0	Uncharacterized protein.	RPOLD domain-containing protein.	0.975
V3ZFS1_LOTGI	V3ZZG2_LOTGI	V3ZFS1	V3ZZG2	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.978
V3ZFS1_LOTGI	V4A0Z9_LOTGI	V3ZFS1	V4A0Z9	Uncharacterized protein.	Uncharacterized protein.	0.956
V3ZFS1_LOTGI	V4A100_LOTGI	V3ZFS1	V4A100	Uncharacterized protein.	RPA43_OB domain-containing protein.	0.988
V3ZFS1_LOTGI	V4A3L1_LOTGI	V3ZFS1	V4A3L1	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.948
V3ZFS1_LOTGI	V4ABV0_LOTGI	V3ZFS1	V4ABV0	Uncharacterized protein.	Uncharacterized protein.	0.964
V3ZFS1_LOTGI	V4ALU5_LOTGI	V3ZFS1	V4ALU5	Uncharacterized protein.	Uncharacterized protein.	0.965
V3ZFS1_LOTGI	V4B431_LOTGI	V3ZFS1	V4B431	Uncharacterized protein.	Uncharacterized protein.	0.953
V3ZFS1_LOTGI	V4BH04_LOTGI	V3ZFS1	V4BH04	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.991
V3ZFS1_LOTGI	V4CQR2_LOTGI	V3ZFS1	V4CQR2	Uncharacterized protein.	Uncharacterized protein.	0.958