STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4A1M3_LOTGIOBG-type G domain-containing protein. (366 aa)    
Predicted Functional Partners:
V3ZXF9_LOTGI
Uncharacterized protein.
   
 
 0.994
V3ZIV3_LOTGI
RWD domain-containing protein.
   
 
 0.934
V4A128_LOTGI
Ribosomal_L23eN domain-containing protein.
   
   0.838
V4AJ35_LOTGI
RWD domain-containing protein.
   
 
 0.836
V4ANP6_LOTGI
Ribosomal_L2_C domain-containing protein.
   
 
 0.784
V4BCC7_LOTGI
Ribosomal_S7 domain-containing protein.
   
 
 0.782
V4AJS1_LOTGI
KH type-2 domain-containing protein.
   
   0.775
V4CM71_LOTGI
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
  
 
 0.775
V4A559_LOTGI
DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.
    
 
 0.768
V3ZFM5_LOTGI
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
   0.762
Your Current Organism:
Lottia gigantea
NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.