Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| LSM8 | V3ZS72_LOTGI | V4CC27 | V3ZS72 | U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. | U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | 0.999 |
| LSM8 | V3ZVN5_LOTGI | V4CC27 | V3ZVN5 | U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. | WD_REPEATS_REGION domain-containing protein. | 0.515 |
| LSM8 | V4A4A4_LOTGI | V4CC27 | V4A4A4 | U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. | U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. | 0.670 |
| LSM8 | V4AET9_LOTGI | V4CC27 | V4AET9 | U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. | Uncharacterized protein. | 0.992 |
| LSM8 | V4AS52_LOTGI | V4CC27 | V4AS52 | U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. | Uncharacterized protein. | 0.460 |
| LSM8 | V4BSJ8_LOTGI | V4CC27 | V4BSJ8 | U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. | SKIP_SNW domain-containing protein. | 0.555 |
| LSM8 | V4BU53_LOTGI | V4CC27 | V4BU53 | U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. | Uncharacterized protein. | 0.646 |
| V3ZMY2_LOTGI | V3ZVN5_LOTGI | V3ZMY2 | V3ZVN5 | Uncharacterized protein. | WD_REPEATS_REGION domain-containing protein. | 0.990 |
| V3ZMY2_LOTGI | V4A4A4_LOTGI | V3ZMY2 | V4A4A4 | Uncharacterized protein. | U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. | 0.601 |
| V3ZMY2_LOTGI | V4AS52_LOTGI | V3ZMY2 | V4AS52 | Uncharacterized protein. | Uncharacterized protein. | 0.998 |
| V3ZMY2_LOTGI | V4AVU3_LOTGI | V3ZMY2 | V4AVU3 | Uncharacterized protein. | Uncharacterized protein. | 0.952 |
| V3ZMY2_LOTGI | V4B039_LOTGI | V3ZMY2 | V4B039 | Uncharacterized protein. | Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. | 0.998 |
| V3ZMY2_LOTGI | V4BSJ8_LOTGI | V3ZMY2 | V4BSJ8 | Uncharacterized protein. | SKIP_SNW domain-containing protein. | 0.998 |
| V3ZMY2_LOTGI | V4BU53_LOTGI | V3ZMY2 | V4BU53 | Uncharacterized protein. | Uncharacterized protein. | 0.994 |
| V3ZS72_LOTGI | LSM8 | V3ZS72 | V4CC27 | U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. | 0.999 |
| V3ZS72_LOTGI | V3ZVN5_LOTGI | V3ZS72 | V3ZVN5 | U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | WD_REPEATS_REGION domain-containing protein. | 0.662 |
| V3ZS72_LOTGI | V4A4A4_LOTGI | V3ZS72 | V4A4A4 | U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. | 0.607 |
| V3ZS72_LOTGI | V4AET9_LOTGI | V3ZS72 | V4AET9 | U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | Uncharacterized protein. | 0.992 |
| V3ZS72_LOTGI | V4BSJ8_LOTGI | V3ZS72 | V4BSJ8 | U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | SKIP_SNW domain-containing protein. | 0.605 |
| V3ZS72_LOTGI | V4BU53_LOTGI | V3ZS72 | V4BU53 | U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | Uncharacterized protein. | 0.613 |
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