STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4A789_LOTGIUncharacterized protein. (228 aa)    
Predicted Functional Partners:
V4CL01_LOTGI
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.936
V4BAM6_LOTGI
WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.
    
 0.924
V3Z876_LOTGI
Uncharacterized protein.
   
 0.912
V3ZWR4_LOTGI
Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.
   
 0.897
V4A470_LOTGI
Protein transport protein sec16.
   
 0.822
V3Z559_LOTGI
Uncharacterized protein.
   
 0.815
V4AJN5_LOTGI
VWFA domain-containing protein.
   
 0.764
V3ZXS0_LOTGI
PB1 domain-containing protein.
   
 0.711
V3ZRA6_LOTGI
L-type lectin-like domain-containing protein.
   
 
 0.695
V4C5R1_LOTGI
Uncharacterized protein.
   
 0.676
Your Current Organism:
Lottia gigantea
NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet
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