STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4A8K4_LOTGIUncharacterized protein. (1523 aa)    
Predicted Functional Partners:
V4B495_LOTGI
Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]
   
 0.862
V4BKW3_LOTGI
Uncharacterized protein.
    
  0.809
V4A3U1_LOTGI
WD_REPEATS_REGION domain-containing protein.
   
 
 0.785
V3ZKJ8_LOTGI
Suf domain-containing protein.
   
 
 0.781
V3ZQB0_LOTGI
CPSF_A domain-containing protein.
   
 
 0.774
V4AL38_LOTGI
C3H1-type domain-containing protein.
   
 0.732
V4BAE4_LOTGI
Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.
   
 0.731
V4BK20_LOTGI
Uncharacterized protein.
   
 
 0.710
V4C3B3_LOTGI
Uncharacterized protein.
    
0.710
V4BM87_LOTGI
MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.
    
 0.703
Your Current Organism:
Lottia gigantea
NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet
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