STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4AAI8_LOTGIBTB domain-containing protein. (1202 aa)    
Predicted Functional Partners:
V4B9C1_LOTGI
Uncharacterized protein.
  
 0.999
V4BRP6_LOTGI
Structure-specific endonuclease subunit SLX1 homolog; Catalytic subunit of a heterodimeric structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA; Belongs to the SLX1 family.
   
 0.955
V4AFT1_LOTGI
Tyrosine--tRNA ligase.
  
 0.940
V3ZYD5_LOTGI
Uncharacterized protein.
  
 0.929
V4BFG0_LOTGI
ERCC4 domain-containing protein.
  
 0.929
V4C7S3_LOTGI
ERCC4 domain-containing protein.
  
 0.910
V3ZZV8_LOTGI
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
   
 0.908
V4A380_LOTGI
3'-5' exonuclease domain-containing protein.
   
 0.908
V4C4L0_LOTGI
ERCC4 domain-containing protein.
  
 0.895
V3ZMX5_LOTGI
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.880
Your Current Organism:
Lottia gigantea
NCBI taxonomy Id: 225164
Other names: L. gigantea, owl limpet
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.